7NXZ image
Deposition Date 2021-03-19
Release Date 2021-04-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7NXZ
Keywords:
Title:
Synthetic glycoform of Human Interleukin 6
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Interleukin-6
Gene (Uniprot):IL6
Chain IDs:A (auth: AAA)
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Natural Glycoforms of Human Interleukin 6 Show Atypical Plasma Clearance.
Angew.Chem.Int.Ed.Engl. 60 13380 13387 (2021)
PMID: 33756033 DOI: 10.1002/anie.202101496

Abstact

A library of glycoforms of human interleukin 6 (IL-6) comprising complex and mannosidic N-glycans was generated by semisynthesis. The three segments were connected by sequential native chemical ligation followed by two-step refolding. The central glycopeptide segments were assembled by pseudoproline-assisted Lansbury aspartylation and subsequent enzymatic elongation of complex N-glycans. Nine IL-6 glycoforms were synthesized, seven of which were evaluated for in vivo plasma clearance in rats and compared to non-glycosylated recombinant IL-6 from E. coli. Each IL-6 glycoform was tested in three animals and reproducibly showed individual serum clearances depending on the structure of the N-glycan. The clearance rates were atypical, since the 2,6-sialylated glycoforms of IL-6 cleared faster than the corresponding asialo IL-6 with terminal galactoses. Compared to non-glycosylated IL-6 the plasma clearance of IL-6 glycoforms was delayed in the presence of larger and multibranched N-glycans in most cases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures