7NS6 image
Deposition Date 2021-03-05
Release Date 2022-02-02
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7NS6
Keywords:
Title:
SARS-CoV-2 Spike (dimers) in complex with six Fu2 nanobodies
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fu2 nanobody
Chain IDs:A (auth: G), B (auth: S), C (auth: H), D (auth: T), E (auth: O), F (auth: U)
Chain Length:145
Number of Molecules:6
Biological Source:Vicugna pacos
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein,Fibritin
Gene (Uniprot):S, wac
Chain IDs:G (auth: I), H (auth: K), I (auth: M), J, K (auth: L), L (auth: N)
Chain Length:1288
Number of Molecules:6
Biological Source:Severe acute respiratory syndrome coronavirus 2, Enterobacteria phage T4
Ligand Molecules
Primary Citation

Abstact

Antibodies binding to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike have therapeutic promise, but emerging variants show the potential for virus escape. This emphasizes the need for therapeutic molecules with distinct and novel neutralization mechanisms. Here we describe the isolation of a nanobody that interacts simultaneously with two RBDs from different spike trimers of SARS-CoV-2, rapidly inducing the formation of spike trimer-dimers leading to the loss of their ability to attach to the host cell receptor, ACE2. We show that this nanobody potently neutralizes SARS-CoV-2, including the beta and delta variants, and cross-neutralizes SARS-CoV. Furthermore, we demonstrate the therapeutic potential of the nanobody against SARS-CoV-2 and the beta variant in a human ACE2 transgenic mouse model. This naturally elicited bispecific monomeric nanobody establishes an uncommon strategy for potent inactivation of viral antigens and represents a promising antiviral against emerging SARS-CoV-2 variants.

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Primary Citation of related structures