7NLL image
Deposition Date 2021-02-22
Release Date 2022-02-02
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7NLL
Keywords:
Title:
SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nanobody Fu2
Chain IDs:C (auth: A), D (auth: C)
Chain Length:145
Number of Molecules:2
Biological Source:Vicugna pacos
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A (auth: B), B (auth: D)
Chain Length:230
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
A bispecific monomeric nanobody induces spike trimer dimers and neutralizes SARS-CoV-2 in vivo.
Nat Commun 13 155 155 (2022)
PMID: 35013189 DOI: 10.1038/s41467-021-27610-z

Abstact

Antibodies binding to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) spike have therapeutic promise, but emerging variants show the potential for virus escape. This emphasizes the need for therapeutic molecules with distinct and novel neutralization mechanisms. Here we describe the isolation of a nanobody that interacts simultaneously with two RBDs from different spike trimers of SARS-CoV-2, rapidly inducing the formation of spike trimer-dimers leading to the loss of their ability to attach to the host cell receptor, ACE2. We show that this nanobody potently neutralizes SARS-CoV-2, including the beta and delta variants, and cross-neutralizes SARS-CoV. Furthermore, we demonstrate the therapeutic potential of the nanobody against SARS-CoV-2 and the beta variant in a human ACE2 transgenic mouse model. This naturally elicited bispecific monomeric nanobody establishes an uncommon strategy for potent inactivation of viral antigens and represents a promising antiviral against emerging SARS-CoV-2 variants.

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Primary Citation of related structures