7NLD image
Entry Detail
PDB ID:
7NLD
Keywords:
Title:
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with low molecular mass inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-02-22
Release Date:
2021-08-11
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 1 ligand 1
Chain IDs:A (auth: C), B (auth: A), C (auth: B), D, E, F
Chain Length:128
Number of Molecules:6
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Terphenyl-Based Small-Molecule Inhibitors of Programmed Cell Death-1/Programmed Death-Ligand 1 Protein-Protein Interaction.
J.Med.Chem. 64 11614 11636 (2021)
PMID: 34313116 DOI: 10.1021/acs.jmedchem.1c00957

Abstact

We describe a new class of potent PD-L1/PD-1 inhibitors based on a terphenyl scaffold that is derived from the rigidified biphenyl-inspired structure. Using in silico docking, we designed and then experimentally demonstrated the effectiveness of the terphenyl-based scaffolds in inhibiting PD-1/PD-L1 complex formation using various biophysical and biochemical techniques. We also present a high-resolution structure of the complex of PD-L1 with one of our most potent inhibitors to identify key PD-L1/inhibitor interactions at the molecular level. In addition, we show the efficacy of our most potent inhibitors in activating the antitumor response using primary human immune cells from healthy donors.

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