7NF0 image
Entry Detail
PDB ID:
7NF0
Keywords:
Title:
T. atroviride Fdc variant TaFdcV in complex with hydroxylated prFMN
Biological Source:
PDB Version:
Deposition Date:
2021-02-05
Release Date:
2021-08-04
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ferulic acid decarboxylase 1
Mutations:E25N N31G G305A D351R K377H P402V F404Y T405M T429A V445P Q448W
Chain IDs:A, B
Chain Length:519
Number of Molecules:2
Biological Source:Hypocrea atroviridis (strain ATCC 20476 / IMI 206040)
Primary Citation
Directed evolution of prenylated FMN-dependent Fdc supports efficient in vivo isobutene production.
Nat Commun 12 5300 5300 (2021)
PMID: 34489427 DOI: 10.1038/s41467-021-25598-0

Abstact

Isobutene is a high value gaseous alkene used as fuel additive and a chemical building block. As an alternative to fossil fuel derived isobutene, we here develop a modified mevalonate pathway for the production of isobutene from glucose in vivo. The final step in the pathway consists of the decarboxylation of 3-methylcrotonic acid, catalysed by an evolved ferulic acid decarboxylase (Fdc) enzyme. Fdc belongs to the prFMN-dependent UbiD enzyme family that catalyses reversible decarboxylation of (hetero)aromatic acids or acrylic acids with extended conjugation. Following a screen of an Fdc library for inherent 3-methylcrotonic acid decarboxylase activity, directed evolution yields variants with up to an 80-fold increase in activity. Crystal structures of the evolved variants reveal that changes in the substrate binding pocket are responsible for increased selectivity. Solution and computational studies suggest that isobutene cycloelimination is rate limiting and strictly dependent on presence of the 3-methyl group.

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