7NEA image
Deposition Date 2021-02-03
Release Date 2021-07-07
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7NEA
Keywords:
Title:
Crystal structure of branched-chain amino acid aminotransferase from Thermobaculum terrenum (M3 mutant).
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Branched-chain-amino-acid aminotransferase
Gene (Uniprot):ilvE
Mutagens:G40V, R42S, Y100F
Chain IDs:A
Chain Length:316
Number of Molecules:1
Biological Source:Thermobaculum terrenum (strain ATCC BAA-798 / YNP1)
Primary Citation
Probing the role of the residues in the active site of the transaminase from Thermobaculum terrenum.
Plos One 16 e0255098 e0255098 (2021)
PMID: 34324538 DOI: 10.1371/journal.pone.0255098

Abstact

Creating biocatalysts for (R)-selective amination effectively is highly desirable in organic synthesis. Despite noticeable progress in the engineering of (R)-amine activity in pyridoxal-5'-phosphate-dependent transaminases of fold type IV, the specialization of the activity is still an intuitive task, as there is poor understanding of sequence-structure-function relationships. In this study, we analyzed this relationship in transaminase from Thermobaculum terrenum, distinguished by expanded substrate specificity and activity in reactions with L-amino acids and (R)-(+)-1-phenylethylamine using α-ketoglutarate and pyruvate as amino acceptors. We performed site-directed mutagenesis to create a panel of the enzyme variants, which differ in the active site residues from the parent enzyme to a putative transaminase specific to (R)-primary amines. The variants were examined in the overall transamination reactions and half-reaction with (R)-(+)-1-phenylethylamine. A structural analysis of the most prominent variants revealed a spatial reorganization in the active sites, which caused changes in activity. Although the specialization to (R)-amine transaminase was not implemented, we succeeded in understanding the role of the particular active site residues in expanding substrate specificity of the enzyme. We showed that the specificity for (R)-(+)-1-phenylethylamine in transaminase from T. terrenum arises without sacrificing the specificity for L-amino acids and α-ketoglutarate and in consensus with it.

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