7NDS image
Deposition Date 2021-02-02
Release Date 2021-11-03
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7NDS
Title:
Crystal structure of TphC in a closed conformation
Biological Source:
Source Organism:
Comamonas sp. (Taxon ID: 34028)
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tripartite tricarboxylate transporter substrate binding protein
Gene (Uniprot):E2578_22390
Chain IDs:A
Chain Length:314
Number of Molecules:1
Biological Source:Comamonas sp.
Ligand Molecules
Primary Citation
Structural basis of terephthalate recognition by solute binding protein TphC.
Nat Commun 12 6244 6244 (2021)
PMID: 34716322 DOI: 10.1038/s41467-021-26508-0

Abstact

Biological degradation of Polyethylene terephthalate (PET) plastic and assimilation of the corresponding monomers ethylene glycol and terephthalate (TPA) into central metabolism offers an attractive route for bio-based molecular recycling and bioremediation applications. A key step is the cellular uptake of the non-permeable TPA into bacterial cells which has been shown to be dependent upon the presence of the key tphC gene. However, little is known from a biochemical and structural perspective about the encoded solute binding protein, TphC. Here, we report the biochemical and structural characterisation of TphC in both open and TPA-bound closed conformations. This analysis demonstrates the narrow ligand specificity of TphC towards aromatic para-substituted dicarboxylates, such as TPA and closely related analogues. Further phylogenetic and genomic context analysis of the tph genes reveals homologous operons as a genetic resource for future biotechnological and metabolic engineering efforts towards circular plastic bio-economy solutions.

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