7NDR image
Entry Detail
PDB ID:
7NDR
Title:
Crystal structure of TphC in an open conformation
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-02-02
Release Date:
2021-11-03
Method Details:
Experimental Method:
Resolution:
1.97 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tripartite tricarboxylate transporter substrate binding protein
Chain IDs:A, B, C, D, E, F
Chain Length:314
Number of Molecules:6
Biological Source:Comamonas sp.
Ligand Molecules
Primary Citation
Structural basis of terephthalate recognition by solute binding protein TphC.
Nat Commun 12 6244 6244 (2021)
PMID: 34716322 DOI: 10.1038/s41467-021-26508-0

Abstact

Biological degradation of Polyethylene terephthalate (PET) plastic and assimilation of the corresponding monomers ethylene glycol and terephthalate (TPA) into central metabolism offers an attractive route for bio-based molecular recycling and bioremediation applications. A key step is the cellular uptake of the non-permeable TPA into bacterial cells which has been shown to be dependent upon the presence of the key tphC gene. However, little is known from a biochemical and structural perspective about the encoded solute binding protein, TphC. Here, we report the biochemical and structural characterisation of TphC in both open and TPA-bound closed conformations. This analysis demonstrates the narrow ligand specificity of TphC towards aromatic para-substituted dicarboxylates, such as TPA and closely related analogues. Further phylogenetic and genomic context analysis of the tph genes reveals homologous operons as a genetic resource for future biotechnological and metabolic engineering efforts towards circular plastic bio-economy solutions.

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