7NBX image
Deposition Date 2021-01-28
Release Date 2021-06-02
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7NBX
Title:
Lateral-open conformation of the lid-locked BAM complex (BamA E435C S665C, BamBDCE) by cryoEM
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamA
Gene (Uniprot):bamA
Mutations:E435C S665C C690S C700S
Chain IDs:A
Chain Length:810
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamB
Gene (Uniprot):bamB
Chain IDs:B
Chain Length:392
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamC
Gene (Uniprot):bamC
Chain IDs:C
Chain Length:344
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamD
Gene (Uniprot):bamD
Chain IDs:D
Chain Length:245
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Polymer Type:polypeptide(L)
Molecule:Outer membrane protein assembly factor BamE
Gene (Uniprot):bamE
Chain IDs:E
Chain Length:123
Number of Molecules:1
Biological Source:Escherichia coli (strain K12)
Ligand Molecules
Primary Citation
The role of membrane destabilisation and protein dynamics in BAM catalysed OMP folding.
Nat Commun 12 4174 4174 (2021)
PMID: 34234105 DOI: 10.1038/s41467-021-24432-x

Abstact

The folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria is catalysed by the β-barrel assembly machinery (BAM). How lateral opening in the β-barrel of the major subunit BamA assists in OMP folding, and the contribution of membrane disruption to BAM catalysis remain unresolved. Here, we use an anti-BamA monoclonal antibody fragment (Fab1) and two disulphide-crosslinked BAM variants (lid-locked (LL), and POTRA-5-locked (P5L)) to dissect these roles. Despite being lethal in vivo, we show that all complexes catalyse folding in vitro, albeit less efficiently than wild-type BAM. CryoEM reveals that while Fab1 and BAM-P5L trap an open-barrel state, BAM-LL contains a mixture of closed and contorted, partially-open structures. Finally, all three complexes globally destabilise the lipid bilayer, while BamA does not, revealing that the BAM lipoproteins are required for this function. Together the results provide insights into the role of BAM structure and lipid dynamics in OMP folding.

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Primary Citation of related structures