7NBW image
Deposition Date 2021-01-28
Release Date 2021-10-06
Last Version Date 2024-01-31
Entry Detail
PDB ID:
7NBW
Title:
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with a pyridin agonist
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.28 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transcriptional regulator MvfR
Gene (Uniprot):mvfR
Chain IDs:A
Chain Length:229
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa PAO1
Ligand Molecules
Primary Citation
Divergent synthesis and biological evaluation of 2-(trifluoromethyl)pyridines as virulence-attenuating inverse agonists targeting PqsR.
Eur.J.Med.Chem. 226 113797 113797 (2021)
PMID: 34520957 DOI: 10.1016/j.ejmech.2021.113797

Abstact

A short and divergent route towards new derivatives of 2-(trifluoromethyl)pyridines as potent inverse agonists of the bacterial target PqsR against Pseudomonas aeruginosa (PA) infections is described. This Gram-negative pathogen causes severe nosocomial infections and common antibiotic treatment options are rendered ineffective due to resistance issues. Based on an earlier identified optimized hit, we conducted derivatization and rigidification attempts employing two central building blocks. The western part of the molecule is built up via a 2-(trifluoromethyl)pyridine head group equipped with a terminal alkyne. The eastern section is then introduced through aryliode motifs exploiting Sonogashira as well as Suzuki-type chemistry. Subsequent modification provided quick access to an array of compounds, allowed for deep SAR insights, and enabled to optimize the hit scaffold into a lead structure of nanomolar potency combined with favorable in vitro ADME/T features.

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Primary Citation of related structures