7NB2 image
Entry Detail
PDB ID:
7NB2
Keywords:
Title:
Crystal structure of human choline alpha in complex with an inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-01-25
Release Date:
2021-10-13
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Choline kinase alpha
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:384
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Identification of unprecedented ATP-competitive choline kinase inhibitors.
Bioorg.Med.Chem.Lett. 51 128310 128310 (2021)
PMID: 34416377 DOI: 10.1016/j.bmcl.2021.128310

Abstact

In this article we describe the identification of unprecedented ATP-competitive ChoKα inhibitors starting from initial hit NMS-P830 that binds to ChoKα in an ATP concentration-dependent manner. This result is confirmed by the co-crystal structure of NMS-P830 in complex with Δ75-ChoKα. NMS-P830 is able to inhibit ChoKα in cells resulting in the reduction of intracellular phosphocholine formation. A structure-based medicinal chemistry program resulted in the identification of selective compounds that have good biochemical activity, solubility and metabolic stability and are suitable for further optimization. The ChoKα inhibitors disclosed in this article demonstrate for the first time the possibility to inhibit ChoKα with ATP-competitive compounds.

Legend

Protein

Chemical

Disease

Primary Citation of related structures