7NA2 image
Deposition Date 2021-06-19
Release Date 2021-11-10
Last Version Date 2024-05-22
Entry Detail
PDB ID:
7NA2
Keywords:
Title:
HDM2 in complex with compound 56
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isoform 11 of E3 ubiquitin-protein ligase Mdm2
Gene (Uniprot):MDM2
Chain IDs:A, B
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation

Abstact

Identification of low-dose, low-molecular-weight, drug-like inhibitors of protein-protein interactions (PPIs) is a challenging area of research. Despite the challenges, the therapeutic potential of PPI inhibition has driven significant efforts toward this goal. Adding to recent success in this area, we describe herein our efforts to optimize a novel purine carboxylic acid-derived inhibitor of the HDM2-p53 PPI into a series of low-projected dose inhibitors with overall favorable pharmacokinetic and physical properties. Ultimately, a strategy focused on leveraging known binding hot spots coupled with biostructural information to guide the design of conformationally constrained analogs and a focus on efficiency metrics led to the discovery of MK-4688 (compound 56), a highly potent, selective, and low-molecular-weight inhibitor suitable for clinical investigation.

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Primary Citation of related structures