ISDA: 7N9X

Deposition Date 2021-06-18

Release Date 2022-06-22

Last Version Date 2024-10-16

Entry Detail

PDB ID:

7N9X

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)
Lama glama (Taxon ID: 9844)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.51 Å

R-Value Free:

0.26

R-Value Work:

0.24

Space Group:

I 2 2 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Capsid protein
Gene (Uniprot):gag
Chain IDs:A (auth: BBB), B (auth: CCC), C (auth: AAA)
Chain Length:222
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1

UniProt ID:B6DRA0 Pfam ID:PF00607, PF19317

Polymer Type:polypeptide(L)
Molecule:Nanobody
Chain IDs:F (auth: DDD)
Chain Length:114
Number of Molecules:1
Biological Source:Lama glama

Polymer Type:polypeptide(L)
Molecule:Nanobody
Chain IDs:E (auth: EEE)
Chain Length:112
Number of Molecules:1
Biological Source:Lama glama

Polymer Type:polypeptide(L)
Molecule:Nanobody
Chain IDs:D (auth: FFF)
Chain Length:115
Number of Molecules:1
Biological Source:Lama glama

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase A
Gene (Uniprot):PPIA
Chain IDs:G (auth: GGG), H (auth: HHH), I (auth: III)
Chain Length:165
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:P62937 Pfam ID:PF00160 EC:5.2.1.8

Ligand Molecules

Primary Citation

CA-targeting nanobody is a tool for studying HIV-1 capsid lattice interactions

Gerber, E.E, Digianantonio, K.M, Tripler, T.N, Smaga, S.S, Summers, B.J, Xiong, Y.Show

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Primary Citation of related structures

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