ISDA: 7N9T

Deposition Date 2021-06-18

Release Date 2021-08-11

Last Version Date 2025-05-28

Entry Detail

PDB ID:

7N9T

Keywords:

ANTIVIRAL PROTEIN/VIRAL PROTEIN

Title:

CryoEM structure of SARS-CoV-2 Spike in complex with Nb17

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Lama glama (Taxon ID: 9844)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.18 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:A, B, C
Chain Length:1123
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:Nanobody Nb17
Chain IDs:D, E, F
Chain Length:119
Number of Molecules:3
Biological Source:Lama glama

Ligand Molecules

Primary Citation

Potent neutralizing nanobodies resist convergent circulating variants of SARS-CoV-2 by targeting diverse and conserved epitopes

Sun, D, Sang, Z, Kim, Y.J, Xiang, Y, Cohen, T, Belford, A.K, Huet, A, Conway, J.F, Sun, J, Taylor, D.J, Schneidman-Duhovny, D, Zhang, C, Huang, W, Shi, Y.Show

Nat Commun 12 4676 ? (2021)

DOI: 10.1038/s41467-021-24963-3

Primary Citation of related structures