7N4N image
Entry Detail
PDB ID:
7N4N
Title:
BACE-2 in complex with ligand 36
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-06-04
Release Date:
2021-10-06
Method Details:
Experimental Method:
Resolution:
1.41 Å
R-Value Free:
0.20
R-Value Work:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-secretase 2
Chain IDs:A
Chain Length:386
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Xaperone
Chain IDs:B (auth: D)
Chain Length:114
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
JNJ-67569762, A 2-Aminotetrahydropyridine-Based Selective BACE1 Inhibitor Targeting the S3 Pocket: From Discovery to Clinical Candidate.
J.Med.Chem. 64 14175 14191 (2021)
PMID: 34553934 DOI: 10.1021/acs.jmedchem.1c00935

Abstact

The discovery of a novel 2-aminotetrahydropyridine class of BACE1 inhibitors is described. Their pKa and lipophilicity were modulated by a pending sulfonyl group, while good permeability and brain penetration were achieved via intramolecular hydrogen bonding. BACE1 selectivity over BACE2 was achieved in the S3 pocket by a novel bicyclic ring system. An optimization addressing reactive metabolite formation, cardiovascular safety, and CNS toxicity is described, leading to the clinical candidate JNJ-67569762 (12), which gave robust dose-dependent BACE1-mediated amyloid β lowering without showing BACE2-dependent hair depigmentation in preclinical models. We show that 12 has a favorable projected human dose and PK and hence presented us with an opportunity to test a highly selective BACE1 inhibitor in humans. However, 12 was found to have a QT effect upon repeat dosing in dogs and its development was halted in favor of other selective leads, which will be reported in the future.

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