7N28 image
Deposition Date 2021-05-28
Release Date 2022-04-06
Last Version Date 2025-05-21
Entry Detail
PDB ID:
7N28
Title:
Cryo-EM structure of broadly neutralizing V2-apex-targeting antibody J033 in complex with HIV-1 Env
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp120
Gene (Uniprot):env
Chain IDs:A, D (auth: F), E (auth: G)
Chain Length:478
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:3BNC117 antibody heavy chain
Chain IDs:B (auth: C), F (auth: J), H (auth: S)
Chain Length:226
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:3BNC117 antibody light chain
Chain IDs:C (auth: D), G (auth: K), I (auth: U)
Chain Length:206
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp41
Gene (Uniprot):env
Chain IDs:L (auth: M), M (auth: B), N
Chain Length:170
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:J033 antibody heavy chain
Chain IDs:J (auth: X)
Chain Length:230
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:J033 antibody light chain
Chain IDs:K (auth: Y)
Chain Length:214
Number of Molecules:1
Biological Source:Macaca mulatta
Primary Citation
Development of Neutralization Breadth against Diverse HIV-1 by Increasing Ab-Ag Interface on V2.
Adv Sci 9 e2200063 e2200063 (2022)
PMID: 35319830 DOI: 10.1002/advs.202200063

Abstact

Understanding maturation pathways of broadly neutralizing antibodies (bnAbs) against HIV-1 can be highly informative for HIV-1 vaccine development. A lineage of J038 bnAbs is now obtained from a long-term SHIV-infected macaque. J038 neutralizes 54% of global circulating HIV-1 strains. Its binding induces a unique "up" conformation for one of the V2 loops in the trimeric envelope glycoprotein and is heavily dependent on glycan, which provides nearly half of the binding surface. Their unmutated common ancestor neutralizes the autologous virus. Continuous maturation enhances neutralization potency and breadth of J038 lineage antibodies via expanding antibody-Env contact areas surrounding the core region contacted by germline-encoded residues. Developmental details and recognition features of J038 lineage antibodies revealed here provide a new pathway for elicitation and maturation of V2-targeting bnAbs.

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Primary Citation of related structures