7MUC image
Entry Detail
PDB ID:
7MUC
EMDB ID:
Keywords:
Title:
Legionella pneumophila Dot/Icm T4SS C1 Reconstruction
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-05-14
Release Date:
2021-10-06
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DotC
Chain IDs:A (auth: AC), N (auth: BC), AA (auth: CC), NA (auth: DC), AB (auth: EC), NB (auth: FC), AC (auth: GC), NC (auth: HC), AD (auth: IC), ND (auth: JC), AE (auth: KC), NE (auth: LC), AF (auth: MC)
Chain Length:303
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:DotD
Chain IDs:B (auth: AD), L (auth: Ad), O (auth: BD), Y (auth: Bd), BA (auth: CD), LA (auth: Cd), OA (auth: DD), YA (auth: Dd), BB (auth: ED), LB (auth: Ed), OB (auth: FD), YB (auth: Fd), BC (auth: GD), LC (auth: Gd), OC (auth: HD), YC (auth: Hd), BD (auth: ID), LD (auth: Id), OD (auth: JD), YD (auth: Jd), BE (auth: KD), LE (auth: Kd), OE (auth: LD), YE (auth: Ld), BF (auth: MD), LF (auth: Md)
Chain Length:163
Number of Molecules:26
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:DotF
Chain IDs:C (auth: AF), M (auth: Af), P (auth: BF), Z (auth: Bf), CA (auth: CF), MA (auth: Cf), PA (auth: DF), ZA (auth: Df), CB (auth: EF), MB (auth: Ef), PB (auth: FF), ZB (auth: Ff), CC (auth: GF), MC (auth: Gf), PC (auth: HF), ZC (auth: Hf), CD (auth: IF), MD (auth: If), PD (auth: JF), ZD (auth: Jf), CE (auth: KF), ME (auth: Kf), PE (auth: LF), ZE (auth: Lf), CF (auth: MF), MF (auth: Mf), NF (auth: VF), RF (auth: WF), VF (auth: XF), ZF (auth: YF), DG (auth: ZF)
Chain Length:269
Number of Molecules:31
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:IcmE protein
Chain IDs:D (auth: AG), Q (auth: BG), DA (auth: CG), QA (auth: DG), DB (auth: EG), QB (auth: FG), DC (auth: GG), QC (auth: HG), DD (auth: IG), QD (auth: JG), DE (auth: KG), QE (auth: LG), DF (auth: MG), OF (auth: VG), SF (auth: WG), WF (auth: XG), AG (auth: YG), EG (auth: ZG)
Chain Length:1048
Number of Molecules:18
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Type IV secretion protein IcmK
Chain IDs:E (auth: AH), R (auth: BH), EA (auth: CH), RA (auth: DH), EB (auth: EH), RB (auth: FH), EC (auth: GH), RC (auth: HH), ED (auth: IH), RD (auth: JH), EE (auth: KH), RE (auth: LH), EF (auth: MH), PF (auth: VH), TF (auth: WH), XF (auth: XH), BG (auth: YH), FG (auth: ZH)
Chain Length:361
Number of Molecules:18
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Inner membrane lipoprotein YiaD
Chain IDs:F (auth: AK), S (auth: BK), FA (auth: CK), SA (auth: DK), FB (auth: EK), SB (auth: FK), FC (auth: GK), SC (auth: HK), FD (auth: IK), SD (auth: JK), FE (auth: KK), SE (auth: LK), FF (auth: MK)
Chain Length:189
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Outer membrane protein, OmpA family protein
Chain IDs:G (auth: AL), T (auth: BL), GA (auth: CL), TA (auth: DL), GB (auth: EL), TB (auth: FL), GC (auth: GL), TC (auth: HL), GD (auth: IL), TD (auth: JL), GE (auth: KL), TE (auth: LL), GF (auth: ML)
Chain Length:249
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:DUF2807 domain-containing protein
Chain IDs:H (auth: AM), U (auth: BM), HA (auth: CM), UA (auth: DM), HB (auth: EM), UB (auth: FM), HC (auth: GM), UC (auth: HM), HD (auth: IM), UD (auth: JM), HE (auth: KM), UE (auth: LM), HF (auth: MM)
Chain Length:320
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Neurogenic locus notch
Chain IDs:I (auth: AN), V (auth: BN), IA (auth: CN), VA (auth: DN), IB (auth: EN), VB (auth: FN), IC (auth: GN), VC (auth: HN), ID (auth: IN), VD (auth: JN), IE (auth: KN), VE (auth: LN), IF (auth: MN)
Chain Length:124
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Unknown protein fragment
Chain IDs:J (auth: AU), W (auth: BU), JA (auth: CU), WA (auth: DU), JB (auth: EU), WB (auth: FU), JC (auth: GU), WC (auth: HU), JD (auth: IU), WD (auth: JU), JE (auth: KU), WE (auth: LU), JF (auth: MU)
Chain Length:9
Number of Molecules:13
Biological Source:Legionella pneumophila
Polymer Type:polypeptide(L)
Description:Unknown protein fragment
Chain IDs:K (auth: AX), X (auth: BX), KA (auth: CX), XA (auth: DX), KB (auth: EX), XB (auth: FX), KC (auth: GX), XC (auth: HX), KD (auth: IX), XD (auth: JX), KE (auth: KX), XE (auth: LX), KF (auth: MX), QF (auth: VX), UF (auth: WX), YF (auth: XX), CG (auth: YX), GG (auth: ZX)
Chain Length:48
Number of Molecules:18
Biological Source:Legionella pneumophila
Ligand Molecules
Primary Citation
Cryo-EM reveals new species-specific proteins and symmetry elements in the Legionella pneumophila Dot/Icm T4SS.
Elife 10 ? ? (2021)
PMID: 34519271 DOI: 10.7554/eLife.70427

Abstact

Legionella pneumophila is an opportunistic pathogen that causes the potentially fatal pneumonia known as Legionnaires' disease. The pathology associated with infection depends on bacterial delivery of effector proteins into the host via the membrane spanning Dot/Icm type IV secretion system (T4SS). We have determined sub-3.0 Å resolution maps of the Dot/Icm T4SS core complex by single particle cryo-EM. The high-resolution structural analysis has allowed us to identify proteins encoded outside the Dot/Icm genetic locus that contribute to the core T4SS structure. We can also now define two distinct areas of symmetry mismatch, one that connects the C18 periplasmic ring (PR) and the C13 outer membrane cap (OMC) and one that connects the C13 OMC with a 16-fold symmetric dome. Unexpectedly, the connection between the PR and OMC is DotH, with five copies sandwiched between the OMC and PR to accommodate the symmetry mismatch. Finally, we observe multiple conformations in the reconstructions that indicate flexibility within the structure.

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Primary Citation of related structures