7MSQ image
Entry Detail
PDB ID:
7MSQ
Title:
Complex between the Fab arm of AB-3467 and the SARS-CoV-2 receptor binding domain (RBD)
Biological Source:
PDB Version:
Deposition Date:
2021-05-12
Release Date:
2022-01-19
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:A, B
Chain Length:204
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:AB-3467 Fab Heavy Chain
Chain IDs:C (auth: D), E (auth: H)
Chain Length:238
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:AB-3467 Fab Light Chain
Chain IDs:D (auth: E), F (auth: L)
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation

Abstact

Viral mutations are an emerging concern in reducing SARS-CoV-2 vaccination efficacy. Second-generation vaccines will need to elicit neutralizing antibodies against sites that are evolutionarily conserved across the sarbecovirus subgenus. Here, we immunized mice containing a human antibody repertoire with diverse sarbecovirus receptor-binding domains (RBDs) to identify antibodies targeting conserved sites of vulnerability. Antibodies with broad reactivity against diverse clade B RBDs targeting the conserved class 4 epitope, with recurring IGHV/IGKV pairs, were readily elicited but were non-neutralizing. However, rare class 4 antibodies binding this conserved RBD supersite showed potent neutralization of SARS-CoV-2 and all variants of concern. Structural analysis revealed that the neutralizing ability of cross-reactive antibodies was reserved only for those with an elongated CDRH3 that extends the antiparallel beta-sheet RBD core and orients the antibody light chain to obstruct ACE2-RBD interactions. These results identify a structurally defined pathway for vaccine strategies eliciting escape-resistant SARS-CoV-2 neutralizing antibodies.

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Primary Citation of related structures