7MSO image
Entry Detail
PDB ID:
7MSO
Title:
Crystal Structure of Polo Box Domain in Complex with Cyclic Peptide Inhibitor
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-05-11
Release Date:
2022-03-02
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine/threonine-protein kinase PLK1
Chain IDs:A, B
Chain Length:237
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cyclic Peptide Inhibitor ZO1-GLN-SER-TPO-45W-MLL
Chain IDs:C (auth: E), D (auth: F)
Chain Length:6
Number of Molecules:2
Biological Source:synthetic construct
Peptide-like Molecules
PRD_002479
Primary Citation
Novel Macrocyclic Peptidomimetics Targeting the Polo-Box Domain of Polo-Like Kinase 1.
J.Med.Chem. 65 1915 1932 (2022)
PMID: 35029981 DOI: 10.1021/acs.jmedchem.1c01359

Abstact

The polo-box domain (PBD) of Plk1 is a promising target for cancer therapeutics. We designed and synthesized novel phosphorylated macrocyclic peptidomimetics targeting PBD based on acyclic phosphopeptide PMQSpTPL. The inhibitory activities of 16e on Plk1-PBD is >30-fold higher than those of PMQSpTPL. Both 16a and 16e possess excellent selectivity for Plk1-PBD over Plk2/3-PBD. Analysis of the cocrystal structure of Plk1-PBD in complex with 16a reveals that the 3-(trifluoromethyl)benzoyl group in 16a interacts with Arg516 through a π-stacking interaction. This π-stacking interaction, which has not been reported previously, provides insight into the design of novel and potent Plk1-PBD inhibitors. Furthermore, 16h, a PEGlyated macrocyclic phosphopeptide derivative, induces Plk1 delocalization and mitotic failure in HeLa cells. Also, the number of phospho-H3-positive cells in a zebrafish embryo increases in proportion to the amount of 16a. Collectively, the novel macrocyclic peptidomimetics should serve as valuable templates for the design of potent and novel Plk1-PBD inhibitors.

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