ISDA

Deposition Date 2021-05-03

Release Date 2021-07-14

Last Version Date 2024-05-22

Entry Detail

PDB ID:

7MOT

Keywords:

HYDROLASE/HYDROLASE INHIBITOR

Title:

Structure of HDAC2 in complex with an inhibitor (compound 9)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.54 Å

R-Value Free:

0.20

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone deacetylase 2
Gene (Uniprot):HDAC2
Chain IDs:A, B, C
Chain Length:376
Number of Molecules:3
Biological Source:Homo sapiens

UniProt ID:Q92769 Pfam ID:PF00850 EC:3.5.1.98

Ligand Molecules

PEG

SO4

V1P

Primary Citation

Discovery of macrocyclic HDACs 1, 2, and 3 selective inhibitors for HIV latency reactivation.

Yu, W, Fells, J, Clausen, D, Liu, J, Klein, D.J, Christine Chung, C, Myers, R.W, Wu, J, Wu, G, Howell, B.J, Barnard, R.J.O, Kozlowski, J.Show

Bioorg.Med.Chem.Lett. 47 128168 128168 (2021)

PMID: 34091041 DOI: 10.1016/j.bmcl.2021.128168

Abstact

A series of unique macrocyclic HDACs 1, 2, and 3 selective inhibitors were identified with good enzymatic activity and high selectivity over HDACs 6 and 8. These macrocyclic HDAC inhibitors used an ethyl ketone as the zinc-binding group. Compounds 25 and 26 stood out as leads due to their low double-digit nM EC50s in the 2C4 cell-based HIV latency reactivation assay. The PK profiles of these macrocyclic HDAC inhibitors still needed improvement.

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Disease

Primary Citation of related structures