7ML6 image
Deposition Date 2021-04-27
Release Date 2021-07-28
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7ML6
Title:
Structure of CalU17 from the Calicheamicin Biosynthesis Pathway of Micromonospora echinospora
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CalU17
Gene (Uniprot):calU17
Chain IDs:A
Chain Length:317
Number of Molecules:1
Biological Source:Micromonospora echinospora
Ligand Molecules
Primary Citation
The crystal structure of DynF from the dynemicin-biosynthesis pathway of Micromonospora chersina.
Acta Crystallogr.,Sect.F 78 1 7 (2022)
PMID: 34981769 DOI: 10.1107/S2053230X21012322

Abstact

Dynemicin is an enediyne natural product from Micromonospora chersina ATCC53710. Access to the biosynthetic gene cluster of dynemicin has enabled the in vitro study of gene products within the cluster to decipher their roles in assembling this unique molecule. This paper reports the crystal structure of DynF, the gene product of one of the genes within the biosynthetic gene cluster of dynemicin. DynF is revealed to be a dimeric eight-stranded β-barrel structure with palmitic acid bound within a cavity. The presence of palmitic acid suggests that DynF may be involved in binding the precursor polyene heptaene, which is central to the synthesis of the ten-membered ring of the enediyne core.

Legend

Protein

Chemical

Disease

Primary Citation of related structures