7MKL image
Deposition Date 2021-04-24
Release Date 2021-05-12
Last Version Date 2025-05-21
Entry Detail
PDB ID:
7MKL
Title:
SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1121
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:SARS2-38 Fv heavy chain
Chain IDs:D (auth: H)
Chain Length:113
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:SARS2-38 Fv light chain
Chain IDs:E (auth: L)
Chain Length:105
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation

Abstact

With the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants with increased transmissibility and potential resistance, antibodies and vaccines with broadly inhibitory activity are needed. Here, we developed a panel of neutralizing anti-SARS-CoV-2 monoclonal antibodies (mAbs) that bound the receptor binding domain of the spike protein at distinct epitopes and blocked virus attachment to its host receptor, human angiotensin converting enzyme-2 (hACE2). Although several potently neutralizing mAbs protected K18-hACE2 transgenic mice against infection caused by ancestral SARS-CoV-2 strains, others induced escape variants in vivo or lost neutralizing activity against emerging strains. One mAb, SARS2-38, potently neutralized all tested SARS-CoV-2 variants of concern and protected mice against challenge by multiple SARS-CoV-2 strains. Structural analysis showed that SARS2-38 engaged a conserved epitope proximal to the receptor binding motif. Thus, treatment with or induction of neutralizing antibodies that bind conserved spike epitopes may limit the loss of potency of therapies or vaccines against emerging SARS-CoV-2 variants.

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Protein

Chemical

Disease

Primary Citation of related structures
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