7MH3 image
Entry Detail
PDB ID:
7MH3
Keywords:
Title:
Crystal structure of R. sphaeroides Photosynthetic Reaction Center variant; Y(M210)3-chlorotyrosine
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-04-14
Release Date:
2021-12-29
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Reaction center protein H chain
Chain IDs:A (auth: H)
Chain Length:266
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:282
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:308
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2LT C TYR modified residue
Primary Citation
Photosynthetic reaction center variants made via genetic code expansion show Tyr at M210 tunes the initial electron transfer mechanism.
Proc.Natl.Acad.Sci.USA 118 ? ? (2021)
PMID: 34907018 DOI: 10.1073/pnas.2116439118

Abstact

Photosynthetic reaction centers (RCs) from Rhodobacter sphaeroides were engineered to vary the electronic properties of a key tyrosine (M210) close to an essential electron transfer component via its replacement with site-specific, genetically encoded noncanonical amino acid tyrosine analogs. High fidelity of noncanonical amino acid incorporation was verified with mass spectrometry and X-ray crystallography and demonstrated that RC variants exhibit no significant structural alterations relative to wild type (WT). Ultrafast transient absorption spectroscopy indicates the excited primary electron donor, P*, decays via a ∼4-ps and a ∼20-ps population to produce the charge-separated state P+HA- in all variants. Global analysis indicates that in the ∼4-ps population, P+HA- forms through a two-step process, P*→ P+BA-→ P+HA-, while in the ∼20-ps population, it forms via a one-step P* → P+HA- superexchange mechanism. The percentage of the P* population that decays via the superexchange route varies from ∼25 to ∼45% among variants, while in WT, this percentage is ∼15%. Increases in the P* population that decays via superexchange correlate with increases in the free energy of the P+BA- intermediate caused by a given M210 tyrosine analog. This was experimentally estimated through resonance Stark spectroscopy, redox titrations, and near-infrared absorption measurements. As the most energetically perturbative variant, 3-nitrotyrosine at M210 creates an ∼110-meV increase in the free energy of P+BA- along with a dramatic diminution of the 1,030-nm transient absorption band indicative of P+BA- formation. Collectively, this work indicates the tyrosine at M210 tunes the mechanism of primary electron transfer in the RC.

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