7MFG image
Entry Detail
PDB ID:
7MFG
EMDB ID:
Title:
Cryo-EM structure of the VRC310 clinical trial, vaccine-elicited, human antibody 310-030-1D06 Fab in complex with an H1 NC99 HA trimer
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2021-04-09
Release Date:
2021-11-03
Method Details:
Experimental Method:
Resolution:
3.87 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Hemagglutinin HA1 chain
Chain IDs:A, E (auth: C), I (auth: G)
Chain Length:326
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Description:Hemagglutinin HA2 chain
Chain IDs:B, F (auth: D), J (auth: I)
Chain Length:222
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Description:310-030-1D06 Heavy
Chain IDs:C (auth: H), G (auth: E), K (auth: J)
Chain Length:120
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:310-030-1D06 Light
Chain IDs:D (auth: L), H (auth: F), L (auth: K)
Chain Length:108
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A single residue in influenza virus H2 hemagglutinin enhances the breadth of the B cell response elicited by H2 vaccination.
Nat Med 28 373 382 (2022)
PMID: 35115707 DOI: 10.1038/s41591-021-01636-8

Abstact

Conserved epitopes on the influenza hemagglutinin (HA) stem are an attractive target for universal vaccine strategies as they elicit broadly neutralizing antibodies. Such antibody responses to stem-specific epitopes have been extensively characterized for HA subtypes H1 and H5 in humans. H2N2 influenza virus circulated 50 years ago and represents a pandemic threat due to the lack of widespread immunity, but, unlike H1 and H5, the H2 HA stem contains Phe45HA2 predicted to sterically clash with HA stem-binding antibodies characterized to date. To understand the effect of Phe45HA2, we compared the HA stem-specific B cell response in post hoc analyses of two phase 1 clinical trials, one testing vaccination with an H2 ferritin nanoparticle immunogen (NCT03186781) and one with an inactivated H5N1 vaccine (NCT01086657). In H2-naive individuals, the magnitude of the B cell response was equivalent, but H2-elicited HA stem-binding B cells displayed greater cross-reactivity than those elicited by H5. However, in individuals with childhood H2 exposure, H5-elicited HA stem-binding B cells also displayed high cross-reactivity, suggesting recall of memory B cells formed 50 years ago. Overall, we propose that a one-residue difference on an HA immunogen can alter establishment and expansion of broadly neutralizing memory B cells. These data have implications for stem-based universal influenza vaccination strategies.

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