7MDS image
Entry Detail
PDB ID:
7MDS
Title:
Crystal structure of AtDHDPS1 in complex with MBDTA-2
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-04-06
Release Date:
2021-08-04
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic
Chain IDs:A, B
Chain Length:338
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
Towards novel herbicide modes of action by inhibiting lysine biosynthesis in plants.
Elife 10 ? ? (2021)
PMID: 34313586 DOI: 10.7554/eLife.69444

Abstact

Weeds are becoming increasingly resistant to our current herbicides, posing a significant threat to agricultural production. Therefore, new herbicides with novel modes of action are urgently needed. In this study, we exploited a novel herbicide target, dihydrodipicolinate synthase (DHDPS), which catalyses the first and rate-limiting step in lysine biosynthesis. The first class of plant DHDPS inhibitors with micromolar potency against Arabidopsis thaliana DHDPS was identified using a high-throughput chemical screen. We determined that this class of inhibitors binds to a novel and unexplored pocket within DHDPS, which is highly conserved across plant species. The inhibitors also attenuated the germination and growth of A. thaliana seedlings and confirmed their pre-emergence herbicidal activity in soil-grown plants. These results provide proof-of-concept that lysine biosynthesis represents a promising target for the development of herbicides with a novel mode of action to tackle the global rise of herbicide-resistant weeds.

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