ISDA

Deposition Date 2021-04-01

Release Date 2021-07-07

Last Version Date 2024-12-25

Entry Detail

PDB ID:

7MC9

Keywords:

HYDROLASE

Title:

X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA

Biological Source:

Source Organism:

Porcine epidemic diarrhea virus (Taxon ID: 28295)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli 'BL21-Gold(DE3)pLysS AG'

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.10 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:3C-like proteinase
Chain IDs:A, C, E, G, I, K, M, O
Chain Length:237
Number of Molecules:8
Biological Source:Porcine epidemic diarrhea virus

UniProt ID:A0A059VJE6 Pfam ID:PF08715

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBB
Chain IDs:B, D, F, H, J, L, N, P
Chain Length:75
Number of Molecules:8
Biological Source:Homo sapiens

UniProt ID:P0CG47 Pfam ID:PF00240

Ligand Molecules

AYE

Primary Citation

Structural insights into the interaction of papain-like protease 2 from the alphacoronavirus porcine epidemic diarrhea virus and ubiquitin

Durie, I.A, Dzimianski, J.V, Daczkowski, C.M, McGuire, J, Faaberg, K, Pegan, S.D.Show

Acta Cryst. D 77 943 953 (2021)

DOI: 10.1107/S205979832100509X

Primary Citation of related structures