7M8S image
Deposition Date 2021-03-30
Release Date 2021-06-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7M8S
Keywords:
IMMUNE SYSTEM
Title:
Crystal Structure of HLA-A*02:01 in complex with KLNDLCFTNV, an 10-mer epitope from SARS-CoV-2 Spike (S386-395)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.35 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
7M8S validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A alpha chain
Chain IDs:A, D
Chain Length:276
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:A0A140T913 Pfam ID:PF00129, PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, E
Chain Length:100
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P61769 Pfam ID:PF07654
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike protein S1 peptide
Gene (Uniprot):S
Chain IDs:C, F
Chain Length:10
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2
Ligand Molecules
GOL
Primary Citation
SARS-CoV-2 Spike-Derived Peptides Presented by HLA Molecules
Biophysica 1 ? ? (2021)
DOI: 10.3390/biophysica1020015
Primary Citation of related structures
7M8S