7M8J image
Deposition Date 2021-03-29
Release Date 2021-05-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7M8J
Title:
SARS-CoV-2 S-NTD + Fab CM25
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.48 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A
Chain Length:257
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:CM25 Fab - Heavy Chain
Chain IDs:B (auth: H)
Chain Length:120
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CM25 Fab - Light Chain
Chain IDs:C (auth: L)
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

The molecular composition and binding epitopes of the immunoglobulin G (IgG) antibodies that circulate in blood plasma after severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection are unknown. Proteomic deconvolution of the IgG repertoire to the spike glycoprotein in convalescent subjects revealed that the response is directed predominantly (>80%) against epitopes residing outside the receptor binding domain (RBD). In one subject, just four IgG lineages accounted for 93.5% of the response, including an amino (N)-terminal domain (NTD)-directed antibody that was protective against lethal viral challenge. Genetic, structural, and functional characterization of a multidonor class of "public" antibodies revealed an NTD epitope that is recurrently mutated among emerging SARS-CoV-2 variants of concern. These data show that "public" NTD-directed and other non-RBD plasma antibodies are prevalent and have implications for SARS-CoV-2 protection and antibody escape.

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Protein

Chemical

Disease

Primary Citation of related structures