7M1I image
Entry Detail
PDB ID:
7M1I
Keywords:
Title:
Crystal structure of dehaloperoxidase B in complex with 2,6-dichlorophenol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-03-13
Release Date:
2022-08-17
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.24
R-Value Work:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Dehaloperoxidase B
Chain IDs:A, B
Chain Length:137
Number of Molecules:2
Biological Source:Amphitrite ornata
Primary Citation
Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols.
J.Inorg.Biochem. 236 111944 111944 (2022)
PMID: 35969974 DOI: 10.1016/j.jinorgbio.2022.111944

Abstact

The multifunctional catalytic globin dehaloperoxidase (DHP) from the marine worm Amphitrite ornata was shown to catalyze the H2O2-dependent oxidation of 2,4- and 2,6-dihalophenols (DXP; X = F, Cl, Br). Product identification by LC-MS revealed multiple monomeric products with varying degrees of oxidation and/or dehalogenation, as well as oligomers with n up to 6. Mechanistic and 18O-labeling studies demonstrated sequential dihalophenol oxidation via peroxidase and peroxygenase activities. Binding studies established that 2,4-DXP (X = Cl, Br) have the highest affinities of any known DHP substrate. X-ray crystallography identified different binding positions for 2,4- and 2,6-DXP substrates in the hydrophobic distal pocket of DHP. Correlation between the number of halogens and the substrate binding orientation revealed a halogen-dependent binding motif for mono- (4-halophenol), di- (2,4- and 2,6-dihalophenol) and trihalophenols (2,4,6-trihalopenol). Taken together, the findings here on dihalophenol reactivity with DHP advance our understanding of how these compounds bridge the inhibitory and oxidative functions of their mono- and trihalophenol counterparts, respectively, and provide further insight into the protein structure-function paradigm relevant to multifunctional catalytic globins in comparison to their monofunctional analogs.

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