7LXU image
Deposition Date 2021-03-05
Release Date 2021-09-22
Last Version Date 2025-06-04
Entry Detail
PDB ID:
7LXU
Keywords:
Title:
Structure of Plasmodium falciparum 20S proteasome with bound MPI-5
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-1 subunit
Gene (Uniprot):PF3D7_0807500
Chain IDs:A, O
Chain Length:240
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-2 subunit
Gene (Uniprot):PF3D7_0608500
Chain IDs:B, P
Chain Length:235
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-3 subunit
Gene (Uniprot):PF3D7_1353800
Chain IDs:C, Q
Chain Length:246
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-4 subunit
Gene (Uniprot):PF3D7_1353900
Chain IDs:D, R
Chain Length:241
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-5 subunit
Gene (Uniprot):PF3D7_0727400
Chain IDs:E, S
Chain Length:256
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-6 subunit
Gene (Uniprot):PF3D7_1474800
Chain IDs:F, T
Chain Length:254
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome alpha-7 subunit
Gene (Uniprot):PF3D7_0317000
Chain IDs:G, U
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-1 subunit
Gene (Uniprot):PF3D7_0931800
Chain IDs:H, V
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-2 subunit
Gene (Uniprot):PF3D7_1328100
Chain IDs:I, W
Chain Length:229
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-3 subunit
Gene (Uniprot):PF3D7_0108000
Chain IDs:J, X
Chain Length:218
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-4 subunit
Gene (Uniprot):PF3D7_1470900
Chain IDs:K, Y
Chain Length:195
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-5 subunit
Gene (Uniprot):PF3D7_1011400
Chain IDs:L, Z
Chain Length:211
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-6 subunit
Gene (Uniprot):PF3D7_0518300
Chain IDs:M, AA (auth: a)
Chain Length:240
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Molecule:20S proteasome beta-7 subunit
Gene (Uniprot):PF3D7_0803800
Chain IDs:N, BA (auth: b)
Chain Length:235
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Primary Citation

Abstact

The Plasmodium falciparum proteasome is a potential antimalarial drug target. We have identified a series of amino-amide boronates that are potent and specific inhibitors of the P. falciparum 20S proteasome (Pf20S) β5 active site and that exhibit fast-acting antimalarial activity. They selectively inhibit the growth of P. falciparum compared with a human cell line and exhibit high potency against field isolates of P. falciparum and Plasmodium vivax They have a low propensity for development of resistance and possess liver stage and transmission-blocking activity. Exemplar compounds, MPI-5 and MPI-13, show potent activity against P. falciparum infections in a SCID mouse model with an oral dosing regimen that is well tolerated. We show that MPI-5 binds more strongly to Pf20S than to human constitutive 20S (Hs20Sc). Comparison of the cryo-electron microscopy (EM) structures of Pf20S and Hs20Sc in complex with MPI-5 and Pf20S in complex with the clinically used anti-cancer agent, bortezomib, reveal differences in binding modes that help to explain the selectivity. Together, this work provides insights into the 20S proteasome in P. falciparum, underpinning the design of potent and selective antimalarial proteasome inhibitors.

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