7LXT image
Entry Detail
PDB ID:
7LXT
EMDB ID:
Keywords:
Title:
Structure of Plasmodium falciparum 20S proteasome with bound bortezomib
Biological Source:
PDB Version:
Deposition Date:
2021-03-05
Release Date:
2021-09-22
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-1 subunit
Chain IDs:A, O
Chain Length:260
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-2 subunit
Chain IDs:B, P
Chain Length:265
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-3 subunit
Chain IDs:C, Q
Chain Length:246
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-4 subunit
Chain IDs:D, R
Chain Length:241
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-5 subunit
Chain IDs:E, S
Chain Length:256
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-6 subunit
Chain IDs:F, T
Chain Length:254
Number of Molecules:2
Biological Source:Plasmodium falciparum
Polymer Type:polypeptide(L)
Description:20S proteasome alpha-7 subunit
Chain IDs:G, U
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-1 subunit
Chain IDs:H, V
Chain Length:252
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-2 subunit
Chain IDs:I, W
Chain Length:229
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-3 subunit
Chain IDs:J, X
Chain Length:218
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-4 subunit
Chain IDs:K, Y
Chain Length:195
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-5 subunit
Chain IDs:L, Z
Chain Length:211
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-6 subunit
Chain IDs:M, AA (auth: a)
Chain Length:260
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Polymer Type:polypeptide(L)
Description:20S proteasome beta-7 subunit
Chain IDs:N, BA (auth: b)
Chain Length:265
Number of Molecules:2
Biological Source:Plasmodium falciparum (isolate 3D7)
Ligand Molecules
Primary Citation

Abstact

The Plasmodium falciparum proteasome is a potential antimalarial drug target. We have identified a series of amino-amide boronates that are potent and specific inhibitors of the P. falciparum 20S proteasome (Pf20S) β5 active site and that exhibit fast-acting antimalarial activity. They selectively inhibit the growth of P. falciparum compared with a human cell line and exhibit high potency against field isolates of P. falciparum and Plasmodium vivax They have a low propensity for development of resistance and possess liver stage and transmission-blocking activity. Exemplar compounds, MPI-5 and MPI-13, show potent activity against P. falciparum infections in a SCID mouse model with an oral dosing regimen that is well tolerated. We show that MPI-5 binds more strongly to Pf20S than to human constitutive 20S (Hs20Sc). Comparison of the cryo-electron microscopy (EM) structures of Pf20S and Hs20Sc in complex with MPI-5 and Pf20S in complex with the clinically used anti-cancer agent, bortezomib, reveal differences in binding modes that help to explain the selectivity. Together, this work provides insights into the 20S proteasome in P. falciparum, underpinning the design of potent and selective antimalarial proteasome inhibitors.

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