7LW1 image
Deposition Date 2021-02-27
Release Date 2022-01-26
Last Version Date 2024-05-29
Entry Detail
PDB ID:
7LW1
Keywords:
Title:
Human phosphofructokinase-1 liver type bound to activator NA-11
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ATP-dependent 6-phosphofructokinase, liver type
Gene (Uniprot):PFKL
Chain IDs:A, B (auth: D), C (auth: E), D (auth: F)
Chain Length:780
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Selective activation of PFKL suppresses the phagocytic oxidative burst.
Cell 184 4480 4494.e15 (2021)
PMID: 34320407 DOI: 10.1016/j.cell.2021.07.004

Abstact

In neutrophils, nicotinamide adenine dinucleotide phosphate (NADPH) generated via the pentose phosphate pathway fuels NADPH oxidase NOX2 to produce reactive oxygen species for killing invading pathogens. However, excessive NOX2 activity can exacerbate inflammation, as in acute respiratory distress syndrome (ARDS). Here, we use two unbiased chemical proteomic strategies to show that small-molecule LDC7559, or a more potent designed analog NA-11, inhibits the NOX2-dependent oxidative burst in neutrophils by activating the glycolytic enzyme phosphofructokinase-1 liver type (PFKL) and dampening flux through the pentose phosphate pathway. Accordingly, neutrophils treated with NA-11 had reduced NOX2-dependent outputs, including neutrophil cell death (NETosis) and tissue damage. A high-resolution structure of PFKL confirmed binding of NA-11 to the AMP/ADP allosteric activation site and explained why NA-11 failed to agonize phosphofructokinase-1 platelet type (PFKP) or muscle type (PFKM). Thus, NA-11 represents a tool for selective activation of PFKL, the main phosphofructokinase-1 isoform expressed in immune cells.

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Primary Citation of related structures