7LTC image
Entry Detail
PDB ID:
7LTC
Keywords:
Title:
Structure of the alpha-N-methyltransferase (SonM) and RiPP precursor (SonA) heteromeric complex (no cofactor)
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-02-19
Release Date:
2021-09-29
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TP-methylase family protein
Chain IDs:A, C
Chain Length:263
Number of Molecules:2
Biological Source:Shewanella oneidensis
Polymer Type:polypeptide(L)
Description:LigA domain-containing protein
Chain IDs:B, D
Chain Length:71
Number of Molecules:2
Biological Source:Shewanella oneidensis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
IML B ILE modified residue
MLE B LEU modified residue
Primary Citation
Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis.
Nat Commun 12 5355 5355 (2021)
PMID: 34504067 DOI: 10.1038/s41467-021-25575-7

Abstact

Peptide backbone α-N-methylations change the physicochemical properties of amide bonds to provide structural constraints and other favorable characteristics including biological membrane permeability to peptides. Borosin natural product pathways are the only known ribosomally encoded and posttranslationally modified peptides (RiPPs) pathways to incorporate backbone α-N-methylations on translated peptides. Here we report the discovery of type IV borosin natural product pathways (termed 'split borosins'), featuring an iteratively acting α-N-methyltransferase and separate precursor peptide substrate from the metal-respiring bacterium Shewanella oneidensis. A series of enzyme-precursor complexes reveal multiple conformational states for both α-N-methyltransferase and substrate. Along with mutational and kinetic analyses, our results give rare context into potential strategies for iterative maturation of RiPPs.

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Primary Citation of related structures