7LQY image
Deposition Date 2021-02-15
Release Date 2021-04-21
Last Version Date 2024-03-06
Entry Detail
PDB ID:
7LQY
Title:
Structure of squirrel TRPV1 in apo state
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Osm-9-like TRP channel 1
Gene (Uniprot):TRPV1
Chain IDs:A, B, C, D
Chain Length:844
Number of Molecules:4
Biological Source:Ictidomys tridecemlineatus
Primary Citation
Extracellular cap domain is an essential component of the TRPV1 gating mechanism.
Nat Commun 12 2154 2154 (2021)
PMID: 33846324 DOI: 10.1038/s41467-021-22507-3

Abstact

Transient receptor potential (TRP) channels are polymodal molecular sensors involved in numerous physiological processes and implicated in a variety of human diseases. Several structures of the founding member of the TRP channel family, TRPV1, are available, all of which were determined for the protein missing the N- and C-termini and the extracellular S5-P-loop. Here, we present structures of the full-length thirteen-lined ground squirrel TRPV1 solved by cryo-EM. Our structures resolve the extracellular cap domain formed by the S5-P-loops and the C-terminus that wraps around the three-stranded β-sheet connecting elements of the TRPV1 intracellular skirt. The cap domain forms a dome above the pore's extracellular entrance, with four portals leading to the ion conductance pathway. Deletion of the cap increases the TRPV1 average conductance, reduces the open probability and affects ion selectivity. Our data show that both the termini and the cap domain are critical determinants of TRPV1 function.

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Primary Citation of related structures