7LQ5 image
Deposition Date 2021-02-13
Release Date 2022-08-24
Last Version Date 2024-12-25
Entry Detail
PDB ID:
7LQ5
Keywords:
Title:
Cryo-EM structure of OmcZ nanowire from Geobacter sulfurreducens
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c
Gene (Uniprot):omcZ
Chain IDs:A, B, C
Chain Length:258
Number of Molecules:3
Biological Source:Geobacter sulfurreducens PCA
Ligand Molecules
Primary Citation
Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity.
Nat Microbiol 8 284 298 (2023)
PMID: 36732469 DOI: 10.1038/s41564-022-01315-5

Abstact

OmcZ nanowires produced by Geobacter species have high electron conductivity (>30 S cm-1). Of 111 cytochromes present in G. sulfurreducens, OmcZ is the only known nanowire-forming cytochrome essential for the formation of high-current-density biofilms that require long-distance (>10 µm) extracellular electron transport. However, the mechanisms underlying OmcZ nanowire assembly and high conductivity are unknown. Here we report a 3.5-Å-resolution cryogenic electron microscopy structure for OmcZ nanowires. Our structure reveals linear and closely stacked haems that may account for conductivity. Surface-exposed haems and charge interactions explain how OmcZ nanowires bind to diverse extracellular electron acceptors and how organization of nanowire network re-arranges in different biochemical environments. In vitro studies explain how G. sulfurreducens employ a serine protease to control the assembly of OmcZ monomers into nanowires. We find that both OmcZ and serine protease are widespread in environmentally important bacteria and archaea, thus establishing a prevalence of nanowire biogenesis across diverse species and environments.

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