7LL8 image
Deposition Date 2021-02-03
Release Date 2021-02-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7LL8
Title:
D-Protein RFX-V1 Bound to the VEGFR1 Domain 2 Site on VEGF-A
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.31 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Isoform L-VEGF189 of Vascular endothelial growth factor A
Gene (Uniprot):VEGFA
Chain IDs:A, B
Chain Length:103
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(D)
Molecule:RFX-V1
Chain IDs:C, D
Chain Length:53
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
A Non-immunogenic Bivalent d-Protein Potently Inhibits Retinal Vascularization and Tumor Growth.
Acs Chem.Biol. 16 548 556 (2021)
PMID: 33621466 DOI: 10.1021/acschembio.1c00017

Abstact

We report a general approach to engineering multivalent d-proteins with antibody-like activities in vivo. Mirror-image phage display and structure-guided design were utilized to create a d-protein that uses receptor mimicry to antagonize vascular endothelial growth factor A (VEGF-A). Selections against the d-protein form of VEGF-A using phage-displayed libraries of two different domain scaffolds yielded two proteins that bound distinct receptor interaction sites on VEGF-A. X-ray crystal structures of the d-protein/VEGF-A complexes were used to guide affinity maturation and to construct a heterodimeric d-protein VEGF-A antagonist with picomolar activity. The d-protein VEGF-A antagonist prevented vascular leakage in a rabbit eye model of wet age-related macular degeneration and slowed tumor growth in the MC38 syngeneic mouse tumor model with efficacies comparable to those of approved antibody drugs, and in contrast with antibodies, the d-protein was non-immunogenic during treatment and following subcutaneous immunizations.

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Primary Citation of related structures