7LG6 image
Entry Detail
PDB ID:
7LG6
EMDB ID:
Title:
BG505 SOSIP.v5.2 in complex with VRC40.01 and RM19R Fabs
Biological Source:
PDB Version:
Deposition Date:
2021-01-19
Release Date:
2021-09-15
Method Details:
Experimental Method:
Resolution:
3.28 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp120
Mutations:E64K, A73C, A316W, T332N, A501C
Chain IDs:A, G (auth: E), M (auth: F)
Chain Length:475
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Mutations:I559P, A561C, T605C
Chain IDs:D (auth: B), J (auth: G), P (auth: I)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:RM19R Fab Heavy Chain
Chain IDs:F (auth: C), L (auth: J), R (auth: K)
Chain Length:225
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:RM19R Fab Kappa Light Chain
Chain IDs:E (auth: D), K (auth: M), Q (auth: N)
Chain Length:214
Number of Molecules:3
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:VRC40.01 Fab Heavy Chain
Chain IDs:B (auth: H), H (auth: O), N (auth: P)
Chain Length:231
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:VRC40.01 Fab Kappa Light Chain
Chain IDs:C (auth: L), I (auth: Q), O (auth: R)
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Recognition of N-linked glycan at residue N276 (glycan276) at the periphery of the CD4-binding site (CD4bs) on the HIV-envelope trimer is a formidable challenge for many CD4bs-directed antibodies. To understand how this glycan can be recognized, here we isolate two lineages of glycan276-dependent CD4bs antibodies. Antibody CH540-VRC40.01 (named for donor-lineage.clone) neutralizes 81% of a panel of 208 diverse strains, while antibody CH314-VRC33.01 neutralizes 45%. Cryo-electron microscopy (cryo-EM) structures of these two antibodies and 179NC75, a previously identified glycan276-dependent CD4bs antibody, in complex with HIV-envelope trimer reveal substantially different modes of glycan276 recognition. Despite these differences, binding of glycan276-dependent antibodies maintains a glycan276 conformation similar to that observed in the absence of glycan276-binding antibodies. By contrast, glycan276-independent CD4bs antibodies, such as VRC01, displace glycan276 upon binding. These results provide a foundation for understanding antibody recognition of glycan276 and suggest its presence may be crucial for priming immunogens seeking to initiate broad CD4bs recognition.

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Chemical

Disease

Primary Citation of related structures