7LER image
Deposition Date 2021-01-14
Release Date 2022-02-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7LER
Title:
Netrin-1 filament assembly
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Host Organism:
Method Details:
Experimental Method:
Resolution:
5.99 Å
R-Value Free:
0.36
R-Value Work:
0.30
R-Value Observed:
0.38
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Netrin-1
Gene (Uniprot):NTN1
Chain IDs:A, B, C, D (auth: E), E (auth: D), F, G, H
Chain Length:443
Number of Molecules:8
Biological Source:Gallus gallus
Ligand Molecules
Primary Citation
The dynamic nature of netrin-1 and the structural basis for glycosaminoglycan fragment-induced filament formation.
Nat Commun 14 1226 1226 (2023)
PMID: 36869049 DOI: 10.1038/s41467-023-36692-w

Abstact

Netrin-1 is a bifunctional chemotropic guidance cue that plays key roles in diverse cellular processes including axon pathfinding, cell migration, adhesion, differentiation, and survival. Here, we present a molecular understanding of netrin-1 mediated interactions with glycosaminoglycan chains of diverse heparan sulfate proteoglycans (HSPGs) and short heparin oligosaccharides. Whereas interactions with HSPGs act as platform to co-localise netrin-1 close to the cell surface, heparin oligosaccharides have a significant impact on the highly dynamic behaviour of netrin-1. Remarkably, the monomer-dimer equilibrium of netrin-1 in solution is abolished in the presence of heparin oligosaccharides and replaced with highly hierarchical and distinct super assemblies leading to unique, yet unknown netrin-1 filament formation. In our integrated approach we provide a molecular mechanism for the filament assembly which opens fresh paths towards a molecular understanding of netrin-1 functions.

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Chemical

Disease

Primary Citation of related structures
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