7L8D image
Entry Detail
PDB ID:
7L8D
EMDB ID:
Title:
BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-4 from animal Rh.33104 (Wk26 time point)
Biological Source:
PDB Version:
Deposition Date:
2020-12-31
Release Date:
2021-08-04
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:BG505 SOSIP MD39 - gp120
Chain IDs:C (auth: A), E (auth: C), G (auth: D)
Chain Length:469
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:BG505 SOSIP MD39 - gp41
Chain IDs:D (auth: B), F (auth: E), H (auth: F)
Chain Length:146
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Rh.33104 pAbC-3 - Heavy Chain
Chain IDs:A (auth: H)
Chain Length:107
Number of Molecules:1
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Description:Rh.33104 pAbC-3 - Light Chain
Chain IDs:B (auth: L)
Chain Length:102
Number of Molecules:1
Biological Source:Macaca mulatta
Ligand Molecules
Primary Citation

Abstact

Engineered ectodomain trimer immunogens based on BG505 envelope glycoprotein are widely utilized as components of HIV vaccine development platforms. In this study, we used rhesus macaques to evaluate the immunogenicity of several stabilized BG505 SOSIP constructs both as free trimers and presented on a nanoparticle. We applied a cryoEM-based method for high-resolution mapping of polyclonal antibody responses elicited in immunized animals (cryoEMPEM). Mutational analysis coupled with neutralization assays were used to probe the neutralization potential at each epitope. We demonstrate that cryoEMPEM data can be used for rapid, high-resolution analysis of polyclonal antibody responses without the need for monoclonal antibody isolation. This approach allowed to resolve structurally distinct classes of antibodies that bind overlapping sites. In addition to comprehensive mapping of commonly targeted neutralizing and non-neutralizing epitopes in BG505 SOSIP immunogens, our analysis revealed that epitopes comprising engineered stabilizing mutations and of partially occupied glycosylation sites can be immunogenic.

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Primary Citation of related structures