7L6J image
Deposition Date 2020-12-23
Release Date 2021-12-01
Last Version Date 2025-07-09
Entry Detail
PDB ID:
7L6J
Keywords:
Title:
Crystal Structure of the Putative Hydrolase from Stenotrophomonas maltophilia
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.78 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
I 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative hydrolase
Gene (Uniprot):Smlt2820
Chain IDs:A
Chain Length:213
Number of Molecules:1
Biological Source:Stenotrophomonas maltophilia (strain K279a)
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Functional and structural characterization of Stenotrophomonas maltophilia EntB, an unusual form of isochorismatase for siderophore synthesis.
Acta Crystallogr.,Sect.F 81 287 296 (2025)
PMID: 40464617 DOI: 10.1107/S2053230X2500490X

Abstact

Clinical and environmental isolates of Stenotrophomonas maltophilia produce an enterobactin-like siderophore that promotes bacterial growth under low-iron conditions. Although prior mutational and bioinformatic analyses indicated that most of the enzymes encoded by the S. maltophilia entCEBB'FA locus are suitably reminiscent of their counterparts in Escherichia coli and other bacteria, Stenotrophomonas EntB was unusual. In bacteria producing enterobactin-related molecules, EntB and its homologs are usually multi-domain proteins in which the amino portion acts as an isochorismatase and the carboxy domain serves as an aryl carrier protein (ArCP). However, in S. maltophilia the isochorismatase and ArCP functions are encoded by two distinct genes: entB and entB', respectively. Current mutant analysis was used to first confirm that S. maltophilia entB is needed for siderophore activity and bacterial growth in iron-depleted media. A crystal structure of S. maltophilia EntB was then obtained. The structure aligned with the N-terminal portion of EntB from E. coli and VibB from Vibrio cholerae, affirming the protein to be a single-domain isochorismatase. However, S. maltophilia EntB also aligned with the single-domain PhzD from Pseudomonas aeruginosa, which is a key enzyme involved in the biosynthesis of the antimicrobial compound phenazine. BLASTP searches indicated that entB and its neighboring genes are fully conserved amongst S. maltophilia strains but are variably present in other Stenotrophomonas species. The closest homologs to S. maltophilia EntB outside the genus were hypothetical proteins/putative isochorismatases in some Gram-negative bacteria (for example Pseudomonas spp. and Xanthomonas spp.), Gram-positive bacteria (Streptomyces spp. and Bacillus subtilis) and fungi (for example Rhizopus arrhizus and Knufia peltigerae).

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