7L55 image
Entry Detail
PDB ID:
7L55
Keywords:
Title:
Solution NMR structure of the cyclic plant protein PDP-23 in DPC micelles
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2020-12-21
Release Date:
2021-01-20
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with acceptable covalent geometry, structures with lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cyclic plant protein PDP-23
Chain IDs:A
Chain Length:28
Number of Molecules:1
Biological Source:Zinnia elegans
Ligand Molecules
Primary Citation
A chameleonic macrocyclic peptide with drug delivery applications.
Chem Sci 12 6670 6683 (2021)
PMID: 34040741 DOI: 10.1039/d1sc00692d

Abstact

Head-to-tail cyclized peptides are intriguing natural products with unusual properties. The PawS-Derived Peptides (PDPs) are ribosomally synthesized as part of precursors for seed storage albumins in species of the daisy family, and are post-translationally excised and cyclized during proteolytic processing. Here we report a PDP twice the typical size and with two disulfide bonds, identified from seeds of Zinnia elegans. In water, synthetic PDP-23 forms a unique dimeric structure in which two monomers containing two β-hairpins cross-clasp and enclose a hydrophobic core, creating a square prism. This dimer can be split by addition of micelles or organic solvent and in monomeric form PDP-23 adopts open or closed V-shapes, exposing different levels of hydrophobicity dependent on conditions. This chameleonic character is unusual for disulfide-rich peptides and engenders PDP-23 with potential for cell delivery and accessing novel targets. We demonstrate this by conjugating a rhodamine dye to PDP-23, creating a stable, cell-penetrating inhibitor of the P-glycoprotein drug efflux pump.

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