7L0L image
Deposition Date 2020-12-11
Release Date 2021-11-03
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7L0L
Title:
Cryo-EM structure of the VRC316 clinical trial, vaccine-elicited, human antibody 316-310-1B11 in complex with an H2 CAN05 HA trimer
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.85 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:B (auth: A), F (auth: C), J (auth: D)
Chain Length:345
Number of Molecules:3
Biological Source:Influenza A virus (A/Canada/720/2005(H2N2))
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:C (auth: B), G (auth: E), K (auth: F)
Chain Length:222
Number of Molecules:3
Biological Source:Influenza A virus (A/Canada/720/2005(H2N2))
Polymer Type:polypeptide(L)
Molecule:316-310-1B11 Heavy Chain
Chain IDs:D (auth: H), H (auth: G), L (auth: I)
Chain Length:236
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:316-310-1B11 Light Chain
Chain IDs:A (auth: L), E (auth: J), I (auth: K)
Chain Length:215
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A single residue in influenza virus H2 hemagglutinin enhances the breadth of the B cell response elicited by H2 vaccination.
Nat Med 28 373 382 (2022)
PMID: 35115707 DOI: 10.1038/s41591-021-01636-8

Abstact

Conserved epitopes on the influenza hemagglutinin (HA) stem are an attractive target for universal vaccine strategies as they elicit broadly neutralizing antibodies. Such antibody responses to stem-specific epitopes have been extensively characterized for HA subtypes H1 and H5 in humans. H2N2 influenza virus circulated 50 years ago and represents a pandemic threat due to the lack of widespread immunity, but, unlike H1 and H5, the H2 HA stem contains Phe45HA2 predicted to sterically clash with HA stem-binding antibodies characterized to date. To understand the effect of Phe45HA2, we compared the HA stem-specific B cell response in post hoc analyses of two phase 1 clinical trials, one testing vaccination with an H2 ferritin nanoparticle immunogen (NCT03186781) and one with an inactivated H5N1 vaccine (NCT01086657). In H2-naive individuals, the magnitude of the B cell response was equivalent, but H2-elicited HA stem-binding B cells displayed greater cross-reactivity than those elicited by H5. However, in individuals with childhood H2 exposure, H5-elicited HA stem-binding B cells also displayed high cross-reactivity, suggesting recall of memory B cells formed 50 years ago. Overall, we propose that a one-residue difference on an HA immunogen can alter establishment and expansion of broadly neutralizing memory B cells. These data have implications for stem-based universal influenza vaccination strategies.

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