7KWU image
Entry Detail
PDB ID:
7KWU
Title:
Crystal Structure of HIV-1 RT in Complex with 16c (K07-15)
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2020-12-02
Release Date:
2021-03-31
Method Details:
Experimental Method:
Resolution:
2.02 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Reverse transcriptase p66
Mutations:K172A, K173A, C280S
Chain IDs:A
Chain Length:557
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1
Polymer Type:polypeptide(L)
Description:Reverse transcriptase p51
Mutations:C280S
Chain IDs:B
Chain Length:429
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1
Primary Citation
2,4,5-Trisubstituted Pyrimidines as Potent HIV-1 NNRTIs: Rational Design, Synthesis, Activity Evaluation, and Crystallographic Studies.
J.Med.Chem. 64 4239 4256 (2021)
PMID: 33734714 DOI: 10.1021/acs.jmedchem.1c00268

Abstact

There is an urgent unmet medical need for novel human immunodeficiency virus type 1 (HIV-1) inhibitors that are effective against a variety of NNRTI-resistance mutations. We report our research efforts aimed at discovering a novel chemotype of anti-HIV-1 agents with improved potency against a variety of NNRTI-resistance mutations in this paper. Structural modifications of the lead K-5a2 led to the identification of a potent inhibitor 16c. 16c yielded highly potent anti-HIV-1 activities and improved resistance profiles compared with the approved drug etravirine. The co-crystal structure revealed the key role of the water networks surrounding the NNIBP for binding and for resilience against resistance mutations, while suggesting further extension of 16c toward the NNRTI-adjacent site as a lead development strategy. Furthermore, 16c demonstrated favorable pharmacokinetic and safety properties, suggesting the potential of 16c as a promising anti-HIV-1 drug candidate.

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