7KW4 image
Deposition Date 2020-11-29
Release Date 2021-09-01
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7KW4
Keywords:
Title:
L-DNA containing 2'-fluoro modification
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.03 Å
R-Value Free:
0.17
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*(0DG)P*(0FU)P*(0DG)P*(0DT)P*(0DA)P*(0DC)P*(0DA)P*(0DC))-3')
Chain IDs:A
Chain Length:8
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Synthesis and Structural Characterization of 2'-Deoxy-2'-fluoro-l-uridine Nucleic Acids.
Org.Lett. 23 5007 5011 (2021)
PMID: 34142829 DOI: 10.1021/acs.orglett.1c01498

Abstact

Despite the development of artificial l-RNA/DNA as therapeutic molecules, the in-depth investigation on their chemical modifications is still limited. Here, we synthesize a chemically derivatized 2'-deoxy-2'-fluoro-l-uridine building block and incorporate it into oligonucleotides. Our thermo-denaturization and enzymatic digestion experiments reveal their superior stability. Furthermore, one crystal structure of l-type fluoro-DNA is determined to characterize its handedness. Our results reveal the increase of l-helix stability by fluoro-modification and provide the foundation for its future functional application.

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Protein

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Disease

Primary Citation of related structures