7KLB image
Deposition Date 2020-10-29
Release Date 2021-04-21
Last Version Date 2023-11-15
Entry Detail
PDB ID:
7KLB
Keywords:
Title:
X-ray Counterpart to Neutron Structure of Reduced Human MnSOD
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.16 Å
R-Value Free:
0.21
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Superoxide dismutase [Mn], mitochondrial
Gene (Uniprot):SOD2
Chain IDs:A, B
Chain Length:199
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
OCS A CYS modified residue
Primary Citation
Direct detection of coupled proton and electron transfers in human manganese superoxide dismutase.
Nat Commun 12 2079 2079 (2021)
PMID: 33824320 DOI: 10.1038/s41467-021-22290-1

Abstact

Human manganese superoxide dismutase is a critical oxidoreductase found in the mitochondrial matrix. Concerted proton and electron transfers are used by the enzyme to rid the mitochondria of O2•-. The mechanisms of concerted transfer enzymes are typically unknown due to the difficulties in detecting the protonation states of specific residues and solvent molecules at particular redox states. Here, neutron diffraction of two redox-controlled manganese superoxide dismutase crystals reveal the all-atom structures of Mn3+ and Mn2+ enzyme forms. The structures deliver direct data on protonation changes between oxidation states of the metal. Observations include glutamine deprotonation, the involvement of tyrosine and histidine with altered pKas, and four unusual strong-short hydrogen bonds, including a low barrier hydrogen bond. We report a concerted proton and electron transfer mechanism for human manganese superoxide dismutase from the direct visualization of active site protons in Mn3+ and Mn2+ redox states.

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