7KIU image
Deposition Date 2020-10-24
Release Date 2021-12-01
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7KIU
Keywords:
Title:
Structure of recombinant human DNase1L3 in complex with Mg2+
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.22 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Deoxyribonuclease gamma
Gene (Uniprot):DNASE1L3
Chain IDs:A, B, C, D
Chain Length:281
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural features of Dnase1L3 responsible for serum antigen clearance.
Commun Biol 5 825 825 (2022)
PMID: 35974043 DOI: 10.1038/s42003-022-03755-5

Abstact

Autoimmunity develops when extracellular DNA released from dying cells is not cleared from serum. While serum DNA is primarily digested by Dnase1 and Dnase1L3, Dnase1 cannot rescue autoimmunity arising from Dnase1L3 deficiencies. Dnase1L3 uniquely degrades antigenic forms of cell-free DNA, including DNA complexed with lipids and proteins. The distinct activity of Dnase1L3 relies on its unique C-terminal Domain (CTD), but the mechanism is unknown. We used multiple biophysical techniques and functional assays to study the interplay between the core catalytic domain and the CTD. While the core domain resembles Dnase1, there are key structural differences between the two enzymes. First, Dnase1L3 is not inhibited by actin due to multiple differences in the actin recognition site. Second, the CTD augments the ability of the core to bind DNA, thereby facilitating the degradation of complexed DNA. Together, these structural insights will inform the development of Dnase1L3-based therapies for autoimmunity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures