7KIQ image
Deposition Date 2020-10-24
Release Date 2021-07-07
Last Version Date 2023-10-18
Entry Detail
PDB ID:
7KIQ
Title:
Crystal structure of the mouse lipin-2 M-Lip domain
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphatidate phosphatase LPIN2
Gene (Uniprot):Lpin2
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:91
Number of Molecules:10
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
The middle lipin domain adopts a membrane-binding dimeric protein fold.
Nat Commun 12 4718 4718 (2021)
PMID: 34354069 DOI: 10.1038/s41467-021-24929-5

Abstact

Phospholipid synthesis and fat storage as triglycerides are regulated by lipin phosphatidic acid phosphatases (PAPs), whose enzymatic PAP function requires association with cellular membranes. Using hydrogen deuterium exchange mass spectrometry, we find mouse lipin 1 binds membranes through an N-terminal amphipathic helix, the Ig-like domain and HAD phosphatase catalytic core, and a middle lipin (M-Lip) domain that is conserved in mammalian and mammalian-like lipins. Crystal structures of the M-Lip domain reveal a previously unrecognized protein fold that dimerizes. The isolated M-Lip domain binds membranes both in vitro and in cells through conserved basic and hydrophobic residues. Deletion of the M-Lip domain in lipin 1 reduces PAP activity, membrane association, and oligomerization, alters subcellular localization, diminishes acceleration of adipocyte differentiation, but does not affect transcriptional co-activation. This establishes the M-Lip domain as a dimeric protein fold that binds membranes and is critical for full functionality of mammalian lipins.

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Primary Citation of related structures