7KIB image
Entry Detail
PDB ID:
7KIB
Title:
PRMT5:MEP50 Complexed with 5,5-Bicyclic Inhibitor Compound 4
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2020-10-23
Release Date:
2021-04-21
Method Details:
Experimental Method:
Resolution:
2.52 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Protein arginine N-methyltransferase 5
Chain IDs:A
Chain Length:645
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Methylosome protein 50
Chain IDs:B
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

Protein arginine methyltransferase 5 (PRMT5) is a type II arginine methyltransferase that catalyzes the post-translational symmetric dimethylation of protein substrates. PRMT5 plays a critical role in regulating biological processes including transcription, cell cycle progression, RNA splicing, and DNA repair. As such, dysregulation of PRMT5 activity is implicated in the development and progression of multiple cancers and is a target of growing clinical interest. Described herein are the structure-based drug designs, robust synthetic efforts, and lead optimization strategies toward the identification of two novel 5,5-fused bicyclic nucleoside-derived classes of potent and efficacious PRMT5 inhibitors. Utilization of compound docking and strain energy calculations inspired novel designs, and the development of flexible synthetic approaches enabled access to complex chemotypes with five contiguous stereocenters. Additional efforts in balancing bioavailability, solubility, potency, and CYP3A4 inhibition led to the identification of diverse lead compounds with favorable profiles, promising in vivo activity, and low human dose projections.

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Primary Citation of related structures