ISDA

Deposition Date 2020-10-19

Release Date 2021-10-27

Last Version Date 2024-05-29

Entry Detail

PDB ID:

7KH1

Keywords:

VIRUS

Title:

Baseplate Complex for Myoviridae Phage XM1

Biological Source:

Source Organism:

Vibrio phage XM1 (Taxon ID: 2748688)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:tail tube protein, gp7
Chain IDs:A (auth: A1), B (auth: B1), C (auth: C1), D (auth: D1), E (auth: E1), F (auth: F1)
Chain Length:143
Number of Molecules:6
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:baseplate wedge protein, gp17
Chain IDs:G (auth: A2), H (auth: B2), I (auth: C2), J (auth: D2), K (auth: E2), L (auth: F2)
Chain Length:242
Number of Molecules:6
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:baseplate organization protein, gp11
Chain IDs:M (auth: A3), N (auth: B3), O (auth: C3), P (auth: D3), Q (auth: E3), R (auth: F3)
Chain Length:250
Number of Molecules:6
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:baseplate stabilizing protein, gp12
Chain IDs:S (auth: A4), T (auth: B4), U (auth: C4), V (auth: D4), W (auth: E4), X (auth: F4)
Chain Length:118
Number of Molecules:6
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:baseplate wedge protein, gp16
Chain IDs:Y (auth: A5), Z (auth: B5), AA (auth: C5), BA (auth: D5), CA (auth: E5), DA (auth: F5), EA (auth: G5), FA (auth: H5), GA (auth: I5), HA (auth: J5), IA (auth: K5), JA (auth: L5)
Chain Length:404
Number of Molecules:12
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:tail sheath protein, gp6
Chain IDs:KA (auth: A6), LA (auth: B6), MA (auth: C6), NA (auth: D6), OA (auth: E6), PA (auth: F6)
Chain Length:497
Number of Molecules:6
Biological Source:Vibrio phage XM1

Polymer Type:polypeptide(L)
Molecule:tail sheath initiator protein, gp15
Chain IDs:QA (auth: A7), RA (auth: B7), SA (auth: C7), TA (auth: D7), UA (auth: E7), VA (auth: F7)
Chain Length:117
Number of Molecules:6
Biological Source:Vibrio phage XM1

Ligand Molecules

Primary Citation

Structure of Vibrio phage XM1, a simple contractile DNA injection machine

Wang, Z, Fokine, A, Guo, X, Jiang, W, Rossmann, M.G, Kuhn, R.J, Luo, Z.H, Klose, T.Show

Biorxiv ? ? ? (2021)

DOI: 10.1101/2021.12.18.469577

Primary Citation of related structures