7KDT image
Deposition Date 2020-10-09
Release Date 2020-10-21
Last Version Date 2024-03-06
Entry Detail
PDB ID:
7KDT
Keywords:
VIRAL PROTEIN
Title:
Human Tom70 in complex with SARS CoV2 Orf9b
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7KDT validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitochondrial import receptor subunit TOM70
Gene (Uniprot):TOMM70
Chain IDs:A
Chain Length:500
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O94826 Pfam ID:PF00515, PF13181
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ORF9b protein
Gene (Uniprot):9b
Chain IDs:B
Chain Length:97
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTD2 Pfam ID:PF09399
Ligand Molecules
NA
Primary Citation
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Gordon, D.E, Hiatt, J, Bouhaddou, M, Rezelj, V.V, Ulferts, S, Braberg, H, Jureka, A.S, Obernier, K, Guo, J.Z, Batra, J, Kaake, R.M, Weckstein, A.R, Owens, T.W, Gupta, M, Pourmal, S, Titus, E.W, Cakir, M, Soucheray, M, McGregor, M, Cakir, Z, Jang, G, O'Meara, M.J, Tummino, T.A, Zhang, Z, Foussard, H, Rojc, A, Zhou, Y, Kuchenov, D, Huttenhain, R, Xu, J, Eckhardt, M, Swaney, D.L, Fabius, J.M, Ummadi, M, Tutuncuoglu, B, Rathore, U, Modak, M, Haas, P, Haas, K.M, Naing, Z.Z.C, Pulido, E.H, Shi, Y, Barrio-Hernandez, I, Memon, D, Petsalaki, E, Dunham, A, Marrero, M.C, Burke, D, Koh, C, Vallet, T, Silvas, J.A, Azumaya, C.M, Billesbolle, C, Brilot, A.F, Campbell, M.G, Diallo, A, Dickinson, M.S, Diwanji, D, Herrera, N, Hoppe, N, Kratochvil, H.T, Liu, Y, Merz, G.E, Moritz, M, Nguyen, H.C, Nowotny, C, Puchades, C, Rizo, A.N, Schulze-Gahmen, U, Smith, A.M, Sun, M, Young, I.D, Zhao, J, Asarnow, D, Biel, J, Bowen, A, Braxton, J.R, Chen, J, Chio, C.M, Chio, U.S, Deshpande, I, Doan, L, Faust, B, Flores, S, Jin, M, Kim, K, Lam, V.L, Li, F, Li, J, Li, Y.L, Li, Y, Liu, X, Lo, M, Lopez, K.E, Melo, A.A, Moss 3rd, F.R, Nguyen, P, Paulino, J, Pawar, K.I, Peters, J.K, Pospiech Jr, T.H, Safari, M, Sangwan, S, Schaefer, K, Thomas, P.V, Thwin, A.C, Trenker, R, Tse, E, Tsui, T.K.M, Wang, F, Whitis, N, Yu, Z, Zhang, K, Zhang, Y, Zhou, F, Saltzberg, D, Hodder, A.J, Shun-Shion, A.S, Williams, D.M, White, K.M, Rosales, R, Kehrer, T, Miorin, L, Moreno, E, Patel, A.H, Rihn, S, Khalid, M.M, Vallejo-Gracia, A, Fozouni, P, Simoneau, C.R, Roth, T.L, Wu, D, Karim, M.A, Ghoussaini, M, Dunham, I, Berardi, F, Weigang, S, Chazal, M, Park, J, Logue, J, McGrath, M, Weston, S, Haupt, R, Hastie, C.J, Elliott, M, Brown, F, Burness, K.A, Reid, E, Dorward, M, Johnson, C, Wilkinson, S.G, Geyer, A, Giesel, D.M, Baillie, C, Raggett, S, Leech, H, Toth, R, Goodman, N, Keough, K.C, Lind, A.L, Klesh, R.J, Hemphill, K.R, Carlson-Stevermer, J, Oki, J, Holden, K, Maures, T, Pollard, K.S, Sali, A, Agard, D.A, Cheng, Y, Fraser, J.S, Frost, A, Jura, N, Kortemme, T, Manglik, A, Southworth, D.R, Stroud, R.M, Alessi, D.R, Davies, P, Frieman, M.B, Ideker, T, Abate, C, Jouvenet, N, Kochs, G, Shoichet, B, Ott, M, Palmarini, M, Shokat, K.M, Garcia-Sastre, A, Rassen, J.A, Grosse, R, Rosenberg, O.S, Verba, K.A, Basler, C.F, Vignuzzi, M, Peden, A.A, Beltrao, P, Krogan, N.J.Show
Science 370 ? ? (2020)
PMID: 33060197 DOI: 10.1126/science.abe9403

Abstact

The COVID-19 pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a grave threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 and Middle East respiratory syndrome coronavirus (MERS-CoV). Here, we have carried out comparative viral-human protein-protein interaction and viral protein localization analyses for all three viruses. Subsequent functional genetic screening identified host factors that functionally impinge on coronavirus proliferation, including Tom70, a mitochondrial chaperone protein that interacts with both SARS-CoV-1 and SARS-CoV-2 ORF9b, an interaction we structurally characterized using cryo-electron microscopy. Combining genetically validated host factors with both COVID-19 patient genetic data and medical billing records identified molecular mechanisms and potential drug treatments that merit further molecular and clinical study.

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Primary Citation of related structures
7KDT