7KDT image
Entry Detail
PDB ID:
7KDT
EMDB ID:
Keywords:
Title:
Human Tom70 in complex with SARS CoV2 Orf9b
Biological Source:
PDB Version:
Deposition Date:
2020-10-09
Release Date:
2020-10-21
Method Details:
Experimental Method:
Resolution:
3.05 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Mitochondrial import receptor subunit TOM70
Chain IDs:A
Chain Length:500
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:ORF9b protein
Chain IDs:B
Chain Length:97
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Ligand Molecules
Primary Citation
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Gordon, D.E, Hiatt, J, Bouhaddou, M, Rezelj, V.V, Ulferts, S, Braberg, H, Jureka, A.S, Obernier, K, Guo, J.Z, Batra, J, Kaake, R.M, Weckstein, A.R, Owens, T.W, Gupta, M, Pourmal, S, Titus, E.W, Cakir, M, Soucheray, M, McGregor, M, Cakir, Z, Jang, G, O'Meara, M.J, Tummino, T.A, Zhang, Z, Foussard, H, Rojc, A, Zhou, Y, Kuchenov, D, Huttenhain, R, Xu, J, Eckhardt, M, Swaney, D.L, Fabius, J.M, Ummadi, M, Tutuncuoglu, B, Rathore, U, Modak, M, Haas, P, Haas, K.M, Naing, Z.Z.C, Pulido, E.H, Shi, Y, Barrio-Hernandez, I, Memon, D, Petsalaki, E, Dunham, A, Marrero, M.C, Burke, D, Koh, C, Vallet, T, Silvas, J.A, Azumaya, C.M, Billesbolle, C, Brilot, A.F, Campbell, M.G, Diallo, A, Dickinson, M.S, Diwanji, D, Herrera, N, Hoppe, N, Kratochvil, H.T, Liu, Y, Merz, G.E, Moritz, M, Nguyen, H.C, Nowotny, C, Puchades, C, Rizo, A.N, Schulze-Gahmen, U, Smith, A.M, Sun, M, Young, I.D, Zhao, J, Asarnow, D, Biel, J, Bowen, A, Braxton, J.R, Chen, J, Chio, C.M, Chio, U.S, Deshpande, I, Doan, L, Faust, B, Flores, S, Jin, M, Kim, K, Lam, V.L, Li, F, Li, J, Li, Y.L, Li, Y, Liu, X, Lo, M, Lopez, K.E, Melo, A.A, Moss 3rd, F.R, Nguyen, P, Paulino, J, Pawar, K.I, Peters, J.K, Pospiech Jr, T.H, Safari, M, Sangwan, S, Schaefer, K, Thomas, P.V, Thwin, A.C, Trenker, R, Tse, E, Tsui, T.K.M, Wang, F, Whitis, N, Yu, Z, Zhang, K, Zhang, Y, Zhou, F, Saltzberg, D, Hodder, A.J, Shun-Shion, A.S, Williams, D.M, White, K.M, Rosales, R, Kehrer, T, Miorin, L, Moreno, E, Patel, A.H, Rihn, S, Khalid, M.M, Vallejo-Gracia, A, Fozouni, P, Simoneau, C.R, Roth, T.L, Wu, D, Karim, M.A, Ghoussaini, M, Dunham, I, Berardi, F, Weigang, S, Chazal, M, Park, J, Logue, J, McGrath, M, Weston, S, Haupt, R, Hastie, C.J, Elliott, M, Brown, F, Burness, K.A, Reid, E, Dorward, M, Johnson, C, Wilkinson, S.G, Geyer, A, Giesel, D.M, Baillie, C, Raggett, S, Leech, H, Toth, R, Goodman, N, Keough, K.C, Lind, A.L, Klesh, R.J, Hemphill, K.R, Carlson-Stevermer, J, Oki, J, Holden, K, Maures, T, Pollard, K.S, Sali, A, Agard, D.A, Cheng, Y, Fraser, J.S, Frost, A, Jura, N, Kortemme, T, Manglik, A, Southworth, D.R, Stroud, R.M, Alessi, D.R, Davies, P, Frieman, M.B, Ideker, T, Abate, C, Jouvenet, N, Kochs, G, Shoichet, B, Ott, M, Palmarini, M, Shokat, K.M, Garcia-Sastre, A, Rassen, J.A, Grosse, R, Rosenberg, O.S, Verba, K.A, Basler, C.F, Vignuzzi, M, Peden, A.A, Beltrao, P, Krogan, N.J.Show
Science 370 ? ? (2020)
PMID: 33060197 DOI: 10.1126/science.abe9403

Abstact

The COVID-19 pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a grave threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 and Middle East respiratory syndrome coronavirus (MERS-CoV). Here, we have carried out comparative viral-human protein-protein interaction and viral protein localization analyses for all three viruses. Subsequent functional genetic screening identified host factors that functionally impinge on coronavirus proliferation, including Tom70, a mitochondrial chaperone protein that interacts with both SARS-CoV-1 and SARS-CoV-2 ORF9b, an interaction we structurally characterized using cryo-electron microscopy. Combining genetically validated host factors with both COVID-19 patient genetic data and medical billing records identified molecular mechanisms and potential drug treatments that merit further molecular and clinical study.

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Protein

Chemical

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Primary Citation of related structures